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pcr products of the cox1 gene  (Macrogen)

 
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    Macrogen pcr products of the cox1 gene
    Pcr Products Of The Cox1 Gene, supplied by Macrogen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cox1+pcr+products/primer+pair+sequences+for+human+cox+1+gene/pm39814875-213-5-19
    Average 90 stars, based on 1 article reviews
    pcr products of the cox1 gene - by Bioz Stars, 2026-10
    90/100 stars

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    Article Snippet: For species confirmation and genotyping analysis, cox1 PCR products (837 bp) were directly sequenced by Macrogen (Seoul, South Korea).



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    A distance-based Maximum Likelihood cladistic tree of E. granulosus s.l. based on the cox1 gene. Values on the tree nodes are bootstrap proportions (%). Only bootstrap values higher than 70% are indicated on each branch. The collected location characterized genotypes (G1/G3/G6) and their accession numbers marked by asterisk (*) and geometric shapes. Taenia crassiceps was considered as an out-group branch (Accession No: JN849401)

    Journal: Iranian Journal of Parasitology

    Article Title: Phylogeography, Genetic Diversity and Population Structure of Echinococcus granulosus Sensu Stricto Inferred by Mitochondrial DNA Markers between Southeast of Iran and Pakistan

    doi: 10.18502/ijpa.v19i2.15850

    Figure Lengend Snippet: A distance-based Maximum Likelihood cladistic tree of E. granulosus s.l. based on the cox1 gene. Values on the tree nodes are bootstrap proportions (%). Only bootstrap values higher than 70% are indicated on each branch. The collected location characterized genotypes (G1/G3/G6) and their accession numbers marked by asterisk (*) and geometric shapes. Taenia crassiceps was considered as an out-group branch (Accession No: JN849401)

    Article Snippet: Forty-six PCR products of cox1 (n: 23) and nad1 (n: 23) genes were purified and sequenced by Bioneer Corporation (South Korea).

    Techniques:

    The Median-joining haplotype network of E. granulosus G1/G3/G6 genotypes based on the cox1 gene. Haplogroups were designated as IR9/PAK1/G1, IR2/PAK2/G3 and IR18/G6 as the most common haplotypes. Abbreviations: IR: Iranian haplotype, PAK: Pakistani haplotype

    Journal: Iranian Journal of Parasitology

    Article Title: Phylogeography, Genetic Diversity and Population Structure of Echinococcus granulosus Sensu Stricto Inferred by Mitochondrial DNA Markers between Southeast of Iran and Pakistan

    doi: 10.18502/ijpa.v19i2.15850

    Figure Lengend Snippet: The Median-joining haplotype network of E. granulosus G1/G3/G6 genotypes based on the cox1 gene. Haplogroups were designated as IR9/PAK1/G1, IR2/PAK2/G3 and IR18/G6 as the most common haplotypes. Abbreviations: IR: Iranian haplotype, PAK: Pakistani haplotype

    Article Snippet: Forty-six PCR products of cox1 (n: 23) and nad1 (n: 23) genes were purified and sequenced by Bioneer Corporation (South Korea).

    Techniques:

    Diversity and neutrality indices of E. granulosus sensu stricto (G1/G3) and E. canadensis (G6) isolates obtained from this study based on nucleotide sequences of cox1 gene. N: number of isolates; Hn: number of haplotypes; Hd: haplotype diversity; Nd: nucleotide diversity.

    Journal: Iranian Journal of Parasitology

    Article Title: Phylogeography, Genetic Diversity and Population Structure of Echinococcus granulosus Sensu Stricto Inferred by Mitochondrial DNA Markers between Southeast of Iran and Pakistan

    doi: 10.18502/ijpa.v19i2.15850

    Figure Lengend Snippet: Diversity and neutrality indices of E. granulosus sensu stricto (G1/G3) and E. canadensis (G6) isolates obtained from this study based on nucleotide sequences of cox1 gene. N: number of isolates; Hn: number of haplotypes; Hd: haplotype diversity; Nd: nucleotide diversity.

    Article Snippet: Forty-six PCR products of cox1 (n: 23) and nad1 (n: 23) genes were purified and sequenced by Bioneer Corporation (South Korea).

    Techniques:

    Pairwise Fst (below the diagonal) and estimated number of migrants per generation (Nm) between E. granulosus s.s., populations calculated from the nucleotide data set of cox1 and nad1 genes at southeast of Iran (Sistan and Baluchestan province) and Pakistan

    Journal: Iranian Journal of Parasitology

    Article Title: Phylogeography, Genetic Diversity and Population Structure of Echinococcus granulosus Sensu Stricto Inferred by Mitochondrial DNA Markers between Southeast of Iran and Pakistan

    doi: 10.18502/ijpa.v19i2.15850

    Figure Lengend Snippet: Pairwise Fst (below the diagonal) and estimated number of migrants per generation (Nm) between E. granulosus s.s., populations calculated from the nucleotide data set of cox1 and nad1 genes at southeast of Iran (Sistan and Baluchestan province) and Pakistan

    Article Snippet: Forty-six PCR products of cox1 (n: 23) and nad1 (n: 23) genes were purified and sequenced by Bioneer Corporation (South Korea).

    Techniques:

    The pairwise sequence distance matrix (divergence and percent identity) of E. granulosus genotypes (G1/G3/G6) based on cox1 gene

    Journal: Iranian Journal of Parasitology

    Article Title: Phylogeography, Genetic Diversity and Population Structure of Echinococcus granulosus Sensu Stricto Inferred by Mitochondrial DNA Markers between Southeast of Iran and Pakistan

    doi: 10.18502/ijpa.v19i2.15850

    Figure Lengend Snippet: The pairwise sequence distance matrix (divergence and percent identity) of E. granulosus genotypes (G1/G3/G6) based on cox1 gene

    Article Snippet: Forty-six PCR products of cox1 (n: 23) and nad1 (n: 23) genes were purified and sequenced by Bioneer Corporation (South Korea).

    Techniques: Sequencing

    Maximum likelihood phylogenetic trees based on 16S rDNA (A) and cox1 (B) partial sequences of Rhipicephalus spp. The Rhipicephalus glabrosscutatus sequence was used as an outgroup. The obtained sequences are shown in bold underline font.

    Journal: Frontiers in Veterinary Science

    Article Title: First report on tick-borne pathogens detected in ticks infesting stray dogs near butcher shops

    doi: 10.3389/fvets.2023.1246871

    Figure Lengend Snippet: Maximum likelihood phylogenetic trees based on 16S rDNA (A) and cox1 (B) partial sequences of Rhipicephalus spp. The Rhipicephalus glabrosscutatus sequence was used as an outgroup. The obtained sequences are shown in bold underline font.

    Article Snippet: PCR products of 16S rDNA and cox1 for ticks, as well as 16S rDNA, groEL , dsb , 18S rDNA, gltA , ompA , and ompB for associated tick-borne pathogens, were sent for capillary bidirectional sequencing (Macrogen Inc., Seoul, South Korea).

    Techniques: Sequencing

    Maximum likelihood phylogenetic trees based on 16S rDNA (A) and dsb (B) for Ehrlichia spp. and 18S rDNA (C) partial sequences for Hepatozoon canis . The Wolbachia pipientis 16S rDNA, Ehrlichia ruminantium dsb , and Hepatozoon catesbianae , Hepatozoon thori, Hepatozoon tenuis , and Hepatozoon involucrum 18S rDNA sequences were used as an outgroup. The obtained sequences are shown in bold underline font.

    Journal: Frontiers in Veterinary Science

    Article Title: First report on tick-borne pathogens detected in ticks infesting stray dogs near butcher shops

    doi: 10.3389/fvets.2023.1246871

    Figure Lengend Snippet: Maximum likelihood phylogenetic trees based on 16S rDNA (A) and dsb (B) for Ehrlichia spp. and 18S rDNA (C) partial sequences for Hepatozoon canis . The Wolbachia pipientis 16S rDNA, Ehrlichia ruminantium dsb , and Hepatozoon catesbianae , Hepatozoon thori, Hepatozoon tenuis , and Hepatozoon involucrum 18S rDNA sequences were used as an outgroup. The obtained sequences are shown in bold underline font.

    Article Snippet: PCR products of 16S rDNA and cox1 for ticks, as well as 16S rDNA, groEL , dsb , 18S rDNA, gltA , ompA , and ompB for associated tick-borne pathogens, were sent for capillary bidirectional sequencing (Macrogen Inc., Seoul, South Korea).

    Techniques:

    Maximum likelihood phylogenetic trees based on groEL (A) and 16S rDNA (B) partial sequences of Coxiella spp. and Anaplasma spp., respectively. The Legionella jordanis groEL and Ehrlichia canis 16S rDNA sequences were used as an outgroup. The obtained sequences are shown in bold underline font.

    Journal: Frontiers in Veterinary Science

    Article Title: First report on tick-borne pathogens detected in ticks infesting stray dogs near butcher shops

    doi: 10.3389/fvets.2023.1246871

    Figure Lengend Snippet: Maximum likelihood phylogenetic trees based on groEL (A) and 16S rDNA (B) partial sequences of Coxiella spp. and Anaplasma spp., respectively. The Legionella jordanis groEL and Ehrlichia canis 16S rDNA sequences were used as an outgroup. The obtained sequences are shown in bold underline font.

    Article Snippet: PCR products of 16S rDNA and cox1 for ticks, as well as 16S rDNA, groEL , dsb , 18S rDNA, gltA , ompA , and ompB for associated tick-borne pathogens, were sent for capillary bidirectional sequencing (Macrogen Inc., Seoul, South Korea).

    Techniques:

    Journal: bioRxiv

    Article Title: The transmission of African Animal Trypanosomiasis (nagana) in two districts in the forest zone of Ghana

    doi: 10.1101/2021.08.11.455898

    Figure Lengend Snippet:

    Article Snippet: The resulting gel product from cox1 PCR were purified using GeneJET Gel Extraction Kit (Cat. no. K0701, Thermo Scientific) according to the manufacture’s protocol.

    Techniques: